Fetching data for community prediction

Use-cases, layers, clusters, timeslices, layerpairs

src/data-hub/proactive-community-detection-microservice/Dockerfile

@@ -2,13 +2,15 @@ FROM python:3
 LABEL maintainer="Alexander Lercher"
 
 RUN apt-get update
-RUN pip install flask
-RUN pip install connexion[swagger-ui]
 
 EXPOSE 5000
 
 WORKDIR /app
 
+COPY src/data-hub/role-stage-discovery-microservice/app/requirements.txt /app/
+RUN pip install -r requirements.txt
+
+COPY src/modules/ /app/
 COPY src/data-hub/proactive-community-detection-microservice/app/ /app/
 RUN chmod a+x main.py
 

src/data-hub/proactive-community-detection-microservice/app/db/dao/__init__.py

+from db.dao.cluster import Cluster as ClusterDao
+from db.dao.layer import Layer as LayerDao
+from db.dao.timeslice import TimeSlice as TimeSliceDao
+from db.dao.layer_pair import LayerPair as LayerPairDao

src/data-hub/proactive-community-detection-microservice/app/db/dao/cluster.py

+import json
+from typing import List, Dict
+from datetime import date, datetime
+
+
+class Cluster:
+    '''
+    A cluster for an arbitrary layer containing some nodes.
+
+    :param use_case: The use-case of the layer
+    :param use_case_table: The use-case table of the layer
+    :param layer_name: The name of the layer in which the cluster is located
+    :param cluster_label: The label of the cluster unique for the layer
+    :param nodes: The individual nodes of the cluster
+    :param label: A human readable label
+    '''
+
+    def __init__(self, use_case: str = None, use_case_table: str = None, layer_name: str = None, 
+                 cluster_label: int = None, nodes: List[Dict] = None, label: str = None,
+                 cluster_dict: Dict = None, from_db=False):
+        self.use_case = use_case
+        self.use_case_table = use_case_table
+        self.layer_name = layer_name
+        self.cluster_label = cluster_label
+        self.nodes = nodes
+        self.label = label
+
+        if cluster_dict is not None:
+            self.from_serializable_dict(cluster_dict, from_db)
+
+    def to_serializable_dict(self, for_db=False) -> Dict:
+        return {
+            "use_case": self.use_case,
+            "use_case_table": self.use_case_table,
+            "layer_name": self.layer_name,
+            "cluster_label": self.cluster_label,
+            "nodes": json.dumps(self.nodes) if for_db else self.nodes,
+            "label": self.label,
+        }
+
+    def from_serializable_dict(self, cluster_dict: Dict, from_db=False):
+        self.use_case = cluster_dict["use_case"]
+        self.use_case_table = cluster_dict["use_case_table"]
+        self.layer_name = cluster_dict["layer_name"]
+        self.cluster_label = cluster_dict["cluster_label"]
+        self.nodes = json.loads(cluster_dict["nodes"]) \
+            if from_db else cluster_dict["nodes"]
+        self.label = cluster_dict["label"]
+
+    def __repr__(self):
+        return json.dumps(self.to_serializable_dict())
+
+    def __str__(self):
+        return f"Cluster({self.__repr__()})"

src/data-hub/proactive-community-detection-microservice/app/db/dao/layer.py

+import json
+from datetime import datetime
+from typing import Dict
+
+class Layer:
+    '''
+    This class represents a single layer of the Multilayer Graph.
+
+    :param layer_info: Information as dictionary to restore the layer object.
+    '''
+
+    def __init__(self, layer_info: Dict = None, from_db=False):
+        if layer_info is not None:
+            self.from_serializable_dict(layer_info, from_db)
+
+    def to_serializable_dict(self, for_db=False) -> Dict:
+        return {
+            "layer_name": self.layer_name,
+            "properties": self.properties,
+            "use_case": self.use_case,
+            "use_case_table": self.use_case_table,
+            "total_properties": self.total_properties,
+        }
+
+    @staticmethod
+    def from_business_logic_dict(layer_info: Dict):
+        layer = Layer()
+        layer.layer_name = layer_info["name"]
+        layer.properties = layer_info["cluster_properties"]
+        layer.total_properties = layer_info["properties"]
+        layer.use_case = layer_info["use_case"]
+        layer.use_case_table = layer_info["table"]
+        return layer
+
+    def from_serializable_dict(self, layer_info: Dict, from_db=False):
+        self.layer_name = layer_info['layer_name']
+        self.properties = layer_info['properties']
+        self.use_case = layer_info["use_case"]
+        self.use_case_table = layer_info["use_case_table"]
+        self.total_properties = layer_info["total_properties"] if "total_properties"in layer_info.keys() else None 
+
+    def __repr__(self):
+        return json.dumps(self.to_serializable_dict())
+
+    def __str__(self):
+        return f"Layer({self.__repr__()})"

src/data-hub/proactive-community-detection-microservice/app/db/dao/layer_pair.py

+from typing import List, Dict
+
+class LayerPair:
+    def __init__(self, use_case: str, table: str, layer: str, reference_layer: str):
+        self.use_case = use_case
+        self.table = table
+        self.layer = layer
+        self.reference_layer = reference_layer
+    
+    @staticmethod
+    def create_from_dict(dict_) -> 'LayerPair':
+        lp = LayerPair(None, None, None, None)
+        lp.__dict__.update(dict_)
+        return lp

src/data-hub/proactive-community-detection-microservice/app/db/dao/timeslice.py

+import json
+from typing import List, Dict, NewType, Any
+from datetime import date, datetime
+
+Node = NewType('Node', dict)
+
+class TimeSlice:
+    '''
+    A time slice for a single layer containing all nodes for that time.
+
+    :param time: The tag indicating the time
+    :param layer_name: The name of the layer the nodes belong to
+    '''
+
+    def __init__(self, time: Any = None, use_case: str = None, use_case_table: str = None, layer_name: str = None,
+                 time_slice_dict: Dict = None, from_db = False):
+        self.time = str(time)
+        self.use_case = use_case
+        self.use_case_table = use_case_table
+        self.layer_name = layer_name
+        self.clusters: Dict[str, List[Node]] = {}
+
+        if time_slice_dict is not None:
+            self.from_serializable_dict(time_slice_dict, from_db)
+
+    def init_all_clusters(self, cluster_labels: List[str]):
+        '''Initializes internal clusters for all labels with an empty list.'''
+        for cluster_label in cluster_labels:
+            # only string keys can be stored in json
+            cluster_label = str(cluster_label)
+            self.clusters[cluster_label] = []
+
+    def add_node_to_cluster(self, cluster_label: str, node):
+        # only string keys can be stored in json
+        cluster_label = str(cluster_label)
+
+        if cluster_label not in self.clusters:
+            # self.clusters[cluster_label] = []
+            raise KeyError(f"self::init_all_clusters must be used to add all global cluster labels beforehand (got {cluster_label})")
+
+        # node = self._get_unique_id(node)
+        self.clusters[cluster_label].append(node)
+
+    def get_nodes_for_cluster(self, cluster_label: str):
+        if cluster_label in self.clusters:
+            return self.clusters[cluster_label]
+        else:
+            return []
+        
+    def _get_unique_id(self, node : Dict) -> Dict:
+        '''Returns a new dict with the unique id only.'''
+        uid_key = 'UniqueID'
+        if uid_key in node:
+            return {uid_key: node[uid_key]}
+
+
+    def to_serializable_dict(self, for_db=False) -> Dict:
+        return {
+            "time": self.time,
+            "use_case": self.use_case,
+            "use_case_table": self.use_case_table,
+            'layer_name': self.layer_name,
+            "clusters": json.dumps(self.clusters) if for_db else self.clusters
+        }
+
+    def from_serializable_dict(self, dict: Dict, from_db=False):
+        self.time = dict["time"]
+        self.use_case = dict["use_case"]
+        self.use_case_table = dict["use_case_table"]
+        self.layer_name = dict['layer_name']
+        self.clusters = json.loads(dict['clusters']) if from_db else dict['clusters']
+
+    def __repr__(self):
+        return json.dumps(self.to_serializable_dict())
+
+    def __str__(self):
+        return f"TimeSlice({self.__repr__()})"

src/data-hub/proactive-community-detection-microservice/app/db/repository.py

+import pymongo
+import network_constants as netconst
+from database.MongoRepositoryBase import MongoRepositoryBase
+import json
+
+from db.dao import *
+from typing import List
+
+import logging
+LOGGER = logging.getLogger(__name__)
+
+
+class Repository(MongoRepositoryBase):
+    '''This is a repository for MongoDb.'''
+
+    def __init__(self):
+        super().__init__(netconst.PROACTIVE_COMMUNITY_DETECTION_DB_HOSTNAME,
+                         netconst.PROACTIVE_COMMUNITY_DETECTION_DB_PORT,
+                         'proactiveCommunityDb')
+
+        self._layer_collection = 'layers'
+        self._layer_pair_collection = 'layer_pairs'
+        self._clusters_collection = 'clusters'
+        self._time_slice_collection = 'time_slices'
+        
+
+#region Layers
+    def add_layer(self, layer: LayerDao):
+        super().insert_entry(self._layer_collection, layer.to_serializable_dict())
+
+    def get_layers(self) -> List[LayerDao]:
+        '''Retrieves all layers from the db, independent of use-case.'''
+        entries = super().get_entries(self._layer_collection, projection={'_id': 0})
+        return [LayerDao(e) for e in entries]
+
+    def get_layers_for_use_case(self, use_case: str) -> LayerDao:
+        entries = super().get_entries(self._layer_collection, selection={'use_case': use_case})
+        return [LayerDao(e) for e in entries]
+
+    def get_layers_for_table(self, use_case: str, use_case_table: str) -> LayerDao:
+        entries = super().get_entries(self._layer_collection, selection={'use_case': use_case, 'use_case_table': use_case_table})
+        return [LayerDao(e) for e in entries]
+
+    def get_layer_by_name(self, use_case:str, use_case_table:str, layer_name:str) -> LayerDao:
+        '''Returns a singe layer for use-case and layer-name.'''
+        entries = super().get_entries(self._layer_collection, selection={'use_case': use_case, 'use_case_table': use_case_table, 'layer_name': layer_name})
+        entries = [LayerDao(e) for e in entries]
+
+        if entries is not None and len(entries) > 0:
+            if len(entries) > 1:
+                LOGGER.error(f"Layer Key {use_case}, {layer_name} is not unique.")
+            return entries[0]
+        else:
+            return None
+    
+    def delete_all_layers(self):
+        super().drop_collection(self._layer_collection)
+#endregion Layers
+
+
+#region Clusters
+    def add_cluster(self, cluster: ClusterDao):
+        super().insert_entry(self._clusters_collection, cluster.to_serializable_dict(for_db=True))
+        
+    def add_clusters(self, clusters: List[ClusterDao]):
+        cluster_dicts = [c.to_serializable_dict(for_db=True) for c in clusters]
+        super().insert_many(self._clusters_collection, cluster_dicts)
+        
+    def get_clusters_for_layer(self, use_case: str, use_case_table: str, layer_name: str) -> List[ClusterDao]:
+        entries = super().get_entries(self._clusters_collection, selection={'use_case': use_case, 'use_case_table': use_case_table, 'layer_name': layer_name}, projection={'_id': 0})
+        return [ClusterDao(cluster_dict=e, from_db=True) for e in entries]
+    
+    def delete_all_clusters(self):
+        super().drop_collection(self._clusters_collection)
+#endregion
+
+
+#region TimeSlice
+    def add_time_slice(self, timeslice: TimeSliceDao):
+        super().insert_entry(self._time_slice_collection, timeslice.to_serializable_dict(for_db=True))
+
+    def get_time_slices(self) -> List[TimeSliceDao]:
+        '''Returns all time slices.'''
+        entries = super().get_entries(self._time_slice_collection)
+        return [TimeSliceDao(None, None, time_slice_dict=e, from_db=True) for e in entries]
+
+    def get_time_slices_by_name(self, use_case: str, use_case_table: str, layer_name: str) -> List[TimeSliceDao]:
+        '''Returns all time slices with the given layer_name.'''
+        entries = super().get_entries(self._time_slice_collection, selection={'use_case': use_case, 'use_case_table': use_case_table, 'layer_name': layer_name})
+        return [TimeSliceDao(time_slice_dict=e, from_db=True) for e in entries]
+
+    def remove_all_time_slices(self):
+        super().drop_collection(self._time_slice_collection)
+#endregion
+
+
+#region LayerPair
+    def add_layer_pair(self, layer_pair: LayerPairDao):
+        super().insert_entry(self._layer_pair_collection, layer_pair.__dict__)
+
+    def get_layer_pairs(self, use_case: str, use_case_table: str) -> List[LayerPairDao]:
+        entries = super().get_entries(self._layer_pair_collection)
+        return [LayerPairDao.create_from_dict(e) for e in entries]
+
+#endregion
+

src/data-hub/proactive-community-detection-microservice/app/debug.py

 from flask import request
 
 def echo():
+    import processing.fetching.fetching as f
+    
+    # print(f._fetch_use_cases())
+    print(f._fetch_use_cases())
+
     return request.json
 
+
  
\ No newline at end of file

src/data-hub/proactive-community-detection-microservice/app/entities/__init__.py

+from entities.timewindow import TimeWindow
+from entities.cluster import Cluster
+from entities.layer import Layer
\ No newline at end of file

src/data-hub/proactive-community-detection-microservice/app/entities/cluster.py

+# from __future__ import annotations
+from typing import Dict, List, Iterable, Any, Tuple
+from entities.timewindow import TimeWindow
+import numpy as np
+import scipy
+from processing import ClusterMetricsCalculatorFactory
+
+
+class Cluster:
+    '''A cluster from one time window containing all metrics used for machine learning.'''
+
+    def __init__(self, time_window_id: Any, cluster_id: Any, cluster_nodes: List[dict], cluster_feature_names: List[str], nr_layer_nodes: int, layer_diversity: int, 
+        global_cluster_center, global_center_distance=None):
+        self.time_window_id = time_window_id
+        self.cluster_id = cluster_id
+
+        metrics_calculator = ClusterMetricsCalculatorFactory.create_metrics_calculator(cluster_nodes, cluster_feature_names, nr_layer_nodes, layer_diversity)
+
+        self.size = metrics_calculator.get_size()
+        self.std_dev = metrics_calculator.get_standard_deviation()
+        self.scarcity = metrics_calculator.get_scarcity()
+        
+        self.importance1 = metrics_calculator.get_importance1()
+        self.importance2 = metrics_calculator.get_importance2()
+        
+        self.range_ = metrics_calculator.get_range()
+        self.center = metrics_calculator.get_center()
+
+        self.global_center_distance = \
+            scipy.spatial.distance.euclidean(self.center, global_cluster_center) \
+            if self.size > 0 \
+            else  0
+
+    def get_time_info(self) -> int:
+        '''Returns the week of the time tuple str, eg. 25 for "(2014, 25)".'''
+        str_tuple = self.time_window_id
+        return int(str_tuple.split(',')[1].strip()[:-1])
+
+    def __repr__(self):
+        return str(self.__dict__)
+
+    def __str__(self):
+        return f"Cluster({self.time_window_id}, {self.cluster_id}, " \
+        f"{self.size}, {self.std_dev}, {self.scarcity}, " \
+        f"{self.importance1}, {self.importance2}, " \
+        f"{self.range_}, {self.center})"
+
+    @staticmethod
+    def create_multiple_from_time_window(time_window: TimeWindow, cluster_feature_names: List[str], global_cluster_centers: Dict[str, Tuple[float]]) -> Iterable['Cluster']:
+        total_layer_nodes = sum([len(nodes) for nodes in time_window.clusters.values()])
+        
+        layer_diversity = len([nodes for nodes in time_window.clusters.values() if len(nodes) > 0])
+
+        for cluster_nr, cluster_nodes in time_window.clusters.items():
+            yield Cluster(time_window.time, cluster_nr, cluster_nodes, cluster_feature_names, total_layer_nodes, layer_diversity, global_cluster_centers[cluster_nr])
+
+    @staticmethod
+    def create_from_dict(dict_) -> 'Cluster':
+        cl = Cluster(0, 0, [], 'None', 0, 0, None)
+        cl.__dict__.update(dict_)
+        return cl

src/data-hub/proactive-community-detection-microservice/app/entities/layer.py

+from typing import Dict, List, Tuple, Any
+import scipy.spatial
+from entities.timewindow import TimeWindow
+from processing import ClusterMetricsCalculatorFactory
+
+
+class InternalCluster:
+    def __init__(self, cluster_id, cluster_nodes: List[dict], feature_names:List[str], global_cluster_center: Tuple[float], n_layer_nodes: int):
+        self.cluster_id = cluster_id
+
+        metrics_calculator = ClusterMetricsCalculatorFactory.create_metrics_calculator(cluster_nodes, feature_names, n_layer_nodes, None)
+
+        self.size = metrics_calculator.get_size()
+        self.relative_size = metrics_calculator.get_importance1()
+        self.center = metrics_calculator.get_center()
+
+        if self.size > 0:
+            self.global_center_distance = scipy.spatial.distance.euclidean(self.center, global_cluster_center)
+        else:
+            self.global_center_distance = 0
+
+    @staticmethod
+    def create_many_from_cluster_nodes(clusters: Dict[str, List[dict]], feature_names: List[str], global_cluster_centers: Dict[str, Tuple[float]]) -> List['InternalCluster']:
+        res_clusters = []
+        total_layer_nodes = sum([len(nodes) for nodes in clusters.values()])
+
+        for key, value in clusters.items():
+
+            # ignore noise as it contains no meaningful cluster information
+            if key == '-1':
+                continue
+
+            res_clusters.append(InternalCluster(key, value, feature_names, global_cluster_centers[key], total_layer_nodes))
+        return res_clusters
+
+
+class Layer:
+    '''Represents metrics for one layer for a single time window.'''
+    def __init__(self, time_window_id: Any, clusters: List[InternalCluster]):
+        self.time_window_id = time_window_id
+
+        active_clusters = [c for c in clusters if c.size > 0]
+                
+        self.n_nodes = sum([c.size for c in clusters])
+        self.n_clusters = len(active_clusters)
+
+        self.relative_cluster_sizes = self.get_relative_cluster_sizes(active_clusters)
+        self.cluster_size_agg_metrics = self.get_size_min_max_avg_sum(active_clusters)
+        self.cluster_relative_size_agg_metrics = self.get_relative_size_min_max_avg_sum(active_clusters)
+        self.entropy = self.get_entropy(active_clusters)
+
+        self.centers = [c.center for c in active_clusters]
+        self.distances_from_global_centers = self.get_distances_from_global_center(active_clusters)
+        self.cluster_center_distance_agg_metrics = self.get_center_distance_min_max_avg_sum(active_clusters)
+
+    def get_size_min_max_avg_sum(self, clusters: List[InternalCluster]) -> dict:
+        '''Returns min, max, avg, and sum of the cluster's absolute sizes.'''
+        if len(clusters) == 0:
+            return {'min':0, 'max':0, 'avg':0, 'sum':0}
+
+        min_ = clusters[0].size
+        max_ = clusters[0].size
+        sum_ = 0
+
+        for c in clusters:
+            value = c.size
+            min_ = min(min_, value)
+            max_ = max(max_, value)
+            sum_ += value
+        avg_ = sum_ / len(clusters)
+        return {'min': min_, 'max': max_, 'avg': avg_, 'sum': sum_}
+        
+    def get_relative_size_min_max_avg_sum(self, clusters: List[InternalCluster]) -> dict:
+        '''Returns min, max, avg, and sum of the cluster's relative sizes.'''
+        if len(clusters) == 0:
+            return {'min':0, 'max':0, 'avg':0, 'sum':0}
+
+        min_ = clusters[0].relative_size
+        max_ = clusters[0].relative_size
+        sum_ = 0
+
+        for c in clusters:
+            value = c.relative_size
+            min_ = min(min_, value)
+            max_ = max(max_, value)
+            sum_ += value
+        avg_ = sum_ / len(clusters)
+        return {'min': min_, 'max': max_, 'avg': avg_, 'sum': sum_}
+
+    def get_center_distance_min_max_avg_sum(self, clusters: List[InternalCluster]) -> dict:
+        '''Returns min, max, avg, and sum of the cluster's center distances.'''
+        if len(clusters) == 0:
+            return {'min':0, 'max':0, 'avg':0, 'sum':0}
+
+        min_ = clusters[0].global_center_distance
+        max_ = clusters[0].global_center_distance
+        sum_ = 0
+
+        for c in clusters:
+            value = c.global_center_distance
+            min_ = min(min_, value)
+            max_ = max(max_, value)
+            sum_ += value
+        avg_ = sum_ / len(clusters)
+        return {'min': min_, 'max': max_, 'avg': avg_, 'sum': sum_}
+
+    def get_relative_cluster_sizes(self, clusters: List[InternalCluster]):
+        return [c.relative_size for c in clusters]
+        
+    def get_entropy(self, clusters: List[InternalCluster]):
+        '''
+        Returns the entropy over all clusters C, 
+        where P(c_i) is the probability that a node belongs to cluster c_i.
+        '''
+        return scipy.stats.entropy(self.get_relative_cluster_sizes(clusters), base=2)
+
+    def get_distances_from_global_center(self, clusters: List[InternalCluster]):
+        return [cluster.global_center_distance for cluster in clusters]
+
+    def __repr__(self):
+        return str(self.__dict__)
+
+    def __str__(self):
+        return f"Layer({self.time_window_id}, " \
+        f"{self.n_nodes}, {self.n_clusters}, {self.relative_cluster_sizes}, " \
+        f"{self.entropy}, {self.centers}, {self.distances_from_global_centers})"
+
+    @staticmethod
+    def create_from_time_window(time_window: TimeWindow, feature_names:List[str], global_cluster_centers: Dict[str, Tuple[float]]) -> 'Layer':
+        clusters: List[InternalCluster] = InternalCluster.create_many_from_cluster_nodes(time_window.clusters, feature_names, global_cluster_centers)
+        return Layer(time_window.time, clusters)
+    
+    @staticmethod
+    def create_from_dict(dict_) -> 'Layer':
+        l = Layer(0, [])
+        l.__dict__.update(dict_)
+        return l
\ No newline at end of file

src/data-hub/proactive-community-detection-microservice/app/entities/timewindow.py

+import json
+from typing import List, Dict, NewType, Any
+from datetime import date, datetime
+
+class TimeWindow:
+    '''
+    A time slice for a single layer containing all nodes for that time.
+
+    :param time: The tag indicating the time
+    :param layer_name: The name of the layer the nodes belong to
+    '''
+
+    def __init__(self, time: Any = None, use_case: str = None, use_case_table: str = None, layer_name: str = None,
+                 time_slice_dict: Dict = None, from_db = False):
+        self.time = str(time)
+        self.use_case = use_case
+        self.use_case_table = use_case_table
+        self.layer_name = layer_name
+        self.clusters: Dict[str, List[dict]] = {}
+
+        if time_slice_dict is not None:
+            self.from_serializable_dict(time_slice_dict, from_db)
+
+    def add_node_to_cluster(self, cluster_label: str, node):
+        # only string keys can be stored in json
+        cluster_label = str(cluster_label)
+
+        if cluster_label not in self.clusters:
+            self.clusters[cluster_label] = []
+
+        # node = self._get_unique_id(node)
+        self.clusters[cluster_label].append(node)
+
+    def get_nodes_for_cluster(self, cluster_label: str):
+        if cluster_label in self.clusters:
+            return self.clusters[cluster_label]
+        else:
+            return []
+        
+    def _get_unique_id(self, node : Dict) -> Dict:
+        '''Returns a new dict with the unique id only.'''
+        uid_key = 'UniqueID'
+        if uid_key in node:
+            return {uid_key: node[uid_key]}
+
+
+    def to_serializable_dict(self, for_db=False) -> Dict:
+        return {
+            "time": self.time,
+            "use_case": self.use_case,
+            "use_case_table": self.use_case_table,
+            'layer_name': self.layer_name,
+            "clusters": json.dumps(self.clusters) if for_db else self.clusters
+        }
+
+    def from_serializable_dict(self, dict: Dict, from_db=False):
+        self.time = dict["time"]
+        self.use_case = dict["use_case"]
+        self.use_case_table = dict["use_case_table"]
+        self.layer_name = dict['layer_name']
+        self.clusters = json.loads(dict['clusters']) if from_db else dict['clusters']
+
+    @staticmethod
+    def create_from_serializable_dict(dict: Dict, from_db=False):
+        ts = TimeWindow()
+        ts.from_serializable_dict(dict, from_db)
+        return ts
+
+    def __repr__(self):
+        return json.dumps(self.to_serializable_dict())
+
+    def __str__(self):
+        return f"TimeWindow({self.__repr__()})"

src/data-hub/proactive-community-detection-microservice/app/main.py

@@ -51,4 +51,4 @@ app.add_api(swagger_util.get_bundled_specs(Path(swagger_path)),
 
 # start app
 if __name__ == '__main__':
-    app.run(host='0.0.0.0', port=5000, ssl_context=context)
+    app.run(host='0.0.0.0', port=5000, ssl_context=context, debug=True)

src/data-hub/proactive-community-detection-microservice/app/processing/ClusterMetricsCalculator.py

+import warnings
+from abc import ABC, abstractmethod
+from typing import Dict, List, Any, Tuple
+import numpy as np
+from scipy.spatial import ConvexHull, qhull, distance
+from math import sqrt
+from statistics import mean
+
+warnings.simplefilter(action='ignore', category=UserWarning)
+# UserWarning: geopandas not available. Some functionality will be disabled.
+from pointpats.centrography import std_distance 
+warnings.simplefilter(action='default', category=UserWarning)
+
+
+class ClusterMetricsCalculator(ABC):
+    def __init__(self, cluster_nodes: List[dict], nr_layer_nodes: int, layer_diversity: int):
+        self.cluster_nodes = cluster_nodes
+        
+        self.nr_layer_nodes = nr_layer_nodes
+        self.layer_diversity = layer_diversity
+
+    def get_size(self) -> int:
+        '''Returns the size of the cluster.'''
+        return len(self.cluster_nodes)
+
+    @abstractmethod
+    def get_standard_deviation(self) -> float:
+        '''Returns the std dev from the center of the distribution.'''
+        pass
+
+    @abstractmethod
+    def get_scarcity(self) -> float:
+        '''
+        Returns the scarcity of the data points regarding the complete range for possible points.
+        High scarcity indicates low density.
+        '''
+        pass
+
+    @abstractmethod
+    def get_range(self) -> float:
+        '''Returns the range or area of the cluster based on the edge nodes.'''
+        pass
+
+    @abstractmethod
+    def get_center(self) -> (float, float):
+        '''Returns the center of the cluster, output is fixed 2d.'''
+        pass
+
+    def get_importance1(self) -> float:
+        '''Returns the ratio of cluster_nodes to layer_nodes.'''
+        return float(len(self.cluster_nodes)) / self.nr_layer_nodes if len(self.cluster_nodes) > 0 else 0
+
+    def get_importance2(self) -> float:
+        '''Returns the inverse of the layer_diversity, where layer_diversity = number of clusters with #nodes > 0.'''
+        return 1.0 / self.layer_diversity if len(self.cluster_nodes) > 0 else 0
+
+    def _convert_feature_to_float(self, feature_value) -> float:
+        return float(feature_value if feature_value is not "" else 0)
+
+   
+class ClusterMetricsCalculator1D(ClusterMetricsCalculator):
+    '''Metrics calculator for clusters which were clustered based on 1 feature (1d clustering).'''
+
+    def __init__(self, cluster_nodes: List[dict], cluster_feature_name: str, nr_layer_nodes: int, layer_diversity: int):
+        super().__init__(cluster_nodes, nr_layer_nodes, layer_diversity)
+        self.feature_values: List[Any] = [self._convert_feature_to_float(node[cluster_feature_name])
+                                          for node in cluster_nodes]
+        if len(self.feature_values) > 0:
+            self.max_value = max(self.feature_values)
+            self.min_value = min(self.feature_values)
+        else:
+            self.max_value = self.min_value = 0
+
+    def get_standard_deviation(self):
+        return np.std(self.feature_values) if len(self.feature_values) > 0 else 0
+
+    def get_scarcity(self):
+        '''Returns the scarcity as cluster_range / cluster_size, or 0 if len(nodes)=0.'''
+        if len(self.feature_values) == 0:
+            return 0
+
+        return self.get_range() / self.get_size()
+
+    def get_range(self):
+        return float(self.max_value - self.min_value)
+
+    def get_center(self):
+        if len(self.feature_values) == 0:
+            return (0, 0)
+        return (sum(self.feature_values) / len(self.feature_values), 0)
+
+
+class ClusterMetricsCalculator2D(ClusterMetricsCalculator):
+    '''Metrics calculator for clusters which were clustered based on 2 features (2d clustering).'''
+    
+    def __init__(self, cluster_nodes: List[dict], cluster_feature_names: List[str], nr_layer_nodes: int, layer_diversity: int):
+        assert len(cluster_feature_names) == 2, "This class is for 2d cluster results only!"
+        super().__init__(cluster_nodes, nr_layer_nodes, layer_diversity)
+
+        self.feature_values: List[Tuple[Any]] = [
+             (self._convert_feature_to_float(node[cluster_feature_names[0]]), self._convert_feature_to_float(node[cluster_feature_names[1]]))
+             for node in cluster_nodes
+             ]
+
+    def get_standard_deviation(self):
+        if len(self.feature_values) == 0:
+            return 0
+
+        warnings.simplefilter(action='ignore', category=RuntimeWarning)
+        std_dist = std_distance(self.feature_values)
+        warnings.simplefilter(action='default', category=RuntimeWarning)
+        
+        if np.isnan(std_dist):
+            return 0 # somehow std_dist=nan if all feature values are same with many decimals
+            
+        return std_dist
+
+    def get_scarcity(self):
+        '''Returns the scarcity as cluster_range / cluster_size, or 0 if len(nodes)=0.'''
+        if len(self.feature_values) == 0:
+            return 0
+
+        if len(self.feature_values) == 1:
+            # exactly 1 element gives inf density
+            return 0
+
+        range_, twodim = self._get_range()
+        if twodim:
+            return sqrt(range_ / self.get_size())
+        else:
+            return range_ / self.get_size()
+   
+    def _get_range(self):
+        twodim = False
+
+        if len(self.feature_values) == 0 or len(self.feature_values) == 1:
+            range_ = 0
+
+        elif len(self.feature_values) == 2:
+            # cannot calculate area with 2 points - just use 2d distance as range instead
+            range_ = float(distance.euclidean(self.feature_values[0], self.feature_values[1]))
+        
+        else:
+            try:
+                # calculate range as 2d area
+                points = self._get_polygon_border_points(self.feature_values)
+                range_ = self._calc_polygon_area(points)
+                # twodim must be known when calculating scarcity
+                twodim = True
+
+            except qhull.QhullError as err:
+                # possible reasons that there is no hull with real area:
+                # 1. all points are at the same location
+                # 2. all points have the same x or y coordinates (lie on one hori/vert line)
+                points = np.asarray(self.feature_values)
+                same_x = len(set(points[:,0])) == 1
+                if same_x:
+                    # use only y feature
+                    features = points[:,1]
+                    range_ = max(features) - min(features)
+
+                same_y = len(set(points[:,1])) == 1
+                if same_y:
+                    # use only x feature
+                    features = points[:,0]
+                    range_ = max(features) - min(features)
+
+                if not same_x and not same_y:
+                    # assume linear distribution of nodes
+                    points = np.asarray(list(set(self.feature_values)))
+                    min_ = min(points[:,0]), min(points[:,1])
+                    max_ = max(points[:,0]), max(points[:,1])
+                    range_ = float(distance.euclidean(min_, max_))
+
+        return (range_, twodim)
+    
+    def get_range(self):
+        return self._get_range()[0]
+
+    def _get_polygon_border_points(self, points: List[List[float]]) -> 'np.array':
+        points = np.asarray(points)
+        hull = ConvexHull(points)
+        return points[hull.vertices]
+
+    def _calc_polygon_area(self, border_points: 'np.array') -> float:
+        x: 'np.array' = border_points[:,0]
+        y: 'np.array' = border_points[:,1]
+        # https://en.wikipedia.org/wiki/Shoelace_formula
+        area = 0.5 * np.abs(np.dot(x, np.roll(y,1)) - np.dot(y, np.roll(x,1)))
+        return float(area)
+
+    def get_center(self):
+        if len(self.feature_values) == 0:
+            return (0, 0)
+            
+        x = [f[0] for f in self.feature_values]
+        y = [f[1] for f in self.feature_values] 
+        centroid = (sum(x) / len(self.feature_values), sum(y) / len(self.feature_values))
+        return centroid
+
+
+class ClusterMetricsCalculatorFactory:
+    @staticmethod
+    def create_metrics_calculator(cluster_nodes: List[dict], cluster_feature_names: List[str], nr_layer_nodes: int, layer_diversity: int) -> ClusterMetricsCalculator:
+        """
+        This factory creates a class which contains metrics about a single cluster based on 
+        its nodes, feature values, its layer total node number and its layer diversity.
+
+        :param cluster_nodes: all nodes from the cluster
+        :param cluster_feature_names: all field names which where used during clustering
+        :param nr_layer_nodes: the number of total layer nodes
+        :param layer_diversity: the diversity of the layer calculated as: number of clusters with nodes > 0
+        """
+        if isinstance(cluster_feature_names, str):
+            return ClusterMetricsCalculator1D(cluster_nodes, cluster_feature_names, nr_layer_nodes, layer_diversity)
+        if len(cluster_feature_names) == 1:
+            return ClusterMetricsCalculator1D(cluster_nodes, cluster_feature_names[0], nr_layer_nodes, layer_diversity)
+
+        if len(cluster_feature_names) == 2:
+            return ClusterMetricsCalculator2D(cluster_nodes, cluster_feature_names, nr_layer_nodes, layer_diversity)

src/data-hub/proactive-community-detection-microservice/app/processing/DataSampler.py

+
+import pandas as pd
+from imblearn.under_sampling import RandomUnderSampler
+from imblearn.over_sampling import SMOTE
+
+class DataSampler:
+    def __init__(self):
+        pass
+
+    def undersample(self, X, y, strategy='not minority') -> ('X', 'y'):
+        '''Undersampling so all class sizes equal minority class size.'''
+        rus = RandomUnderSampler(random_state=42, sampling_strategy=strategy)
+        X_undersampled, y_undersampled = rus.fit_resample(X, y)
+
+        return X_undersampled, y_undersampled
+
+    def oversample(self, X, y) -> ('X', 'y'):
+        '''Oversample based on SMOTE so all class sizes equal majority class size.'''
+        sm = SMOTE(random_state=42)
+        X_oversampled, Y_oversampled = sm.fit_resample(X, y)
+
+        return X_oversampled, Y_oversampled
+
+    def sample_fixed_size(self, X, y, size: int) -> ('X', 'y'):
+        sampling_sizes = {k: min(size, v) for k, v in y.value_counts().items()}
+
+        # undersample the larger classes to size
+        X, y = self.undersample(X, y, strategy=sampling_sizes)
+        
+        # oversample the smaller classes to size
+        X, y = self.oversample(X, y)
+
+        return X, y
+
+    def sample_median_size(self, X, y: pd.Series, max_size:int=None) -> ('X', 'y'):
+        '''Sample the median class size for all classes.'''
+        median = int(y.value_counts().median())
+
+        if max_size is not None:
+            median = min(median, max_size)
+        
+        return self.sample_fixed_size(X, y, size=median)

src/data-hub/proactive-community-detection-microservice/app/processing/__init__.py

+from processing.ClusterMetricsCalculator import ClusterMetricsCalculator, ClusterMetricsCalculator1D, ClusterMetricsCalculator2D, ClusterMetricsCalculatorFactory
+from processing.DataSampler import DataSampler
+from processing.fetching import fetching
\ No newline at end of file

src/data-hub/proactive-community-detection-microservice/app/processing/data_prep/dataprep.py

+
+
+if __name__ == '__main__':

src/data-hub/proactive-community-detection-microservice/app/processing/fetching/fetching.py

 from security.token_manager import TokenManager
 import network_constants
-from db.entities.layer import Layer
 from db.repository import Repository
+from db.dao import *
 
 from typing import List, Dict
 import requests
@@ -23,9 +23,7 @@ def _fetch_use_cases() -> List[str]:
     if response.status_code != 200:
         raise ConnectionError(f"Could not fetch use-cases from business-logic microservice, statuscode: {response.status_code}!")
 
-    data = json.loads(response.text)
-
-    return [row["name"] for row in data]
+    return [row["name"] for row in response.json()]
 
 
 def _fetch_tables(use_case: str) -> List[str]:
@@ -41,14 +39,12 @@ def _fetch_tables(use_case: str) -> List[str]:
     )
 
     if response.status_code != 200:
-        raise ConnectionError(f"Could not fetch tables for {use_case} from business-logic microservice, statuscode: {response.status_code}!")
-
-    data = json.loads(response.text)
+        raise ConnectionError(f"Could not fetch use-cases from business-logic microservice, statuscode: {response.status_code}!")
 
-    return [row["name"] for row in data]
+    return [row["name"] for row in response.json()]    
 
 
-def _fetch_layers(use_case: str, table: str) -> List[Layer]:
+def _fetch_layers(use_case: str, table: str) -> List[LayerDao]:
     jwt = TokenManager.getInstance().getToken()
 
     url = f'https://{network_constants.BUSINESS_LOGIC_HOSTNAME}:{network_constants.BUSINESS_LOGIC_REST_PORT}/api/use-cases/{use_case}/tables/{table}/layers'
@@ -61,17 +57,15 @@ def _fetch_layers(use_case: str, table: str) -> List[Layer]:
     )
 
     if response.status_code != 200:
-        raise ConnectionError(f"Could not fetch layers for {use_case}//{table} from business-logic microservice, statuscode: {response.status_code}!")
+        raise ConnectionError(f"Could not fetch layers for {use_case} from business-logic microservice, statuscode: {response.status_code}!")
 
-    data = json.loads(response.text)
-    
-    return [Layer.from_business_logic_dict(row) for row in data]
+    return [LayerDao.from_business_logic_dict(row) for row in response.json()]
 
 
-def _fetch_nodes(use_case: str, table: str, layer_name: str) -> List[Dict]:
+def _fetch_clusters(use_case: str, table: str, layer_name: str) -> List[str]:
     jwt = TokenManager.getInstance().getToken()
 
-    url = f'https://{network_constants.SEMANTIC_LINKING_HOSTNAME}:{network_constants.SEMANTIC_LINKING_REST_PORT}/api/use-cases/{use_case}/tables/{table}/layers/{layer_name}/nodes'
+    url = f'https://{network_constants.ROLESTAGE_DISCOVERY_HOSTNAME}:{network_constants.ROLESTAGE_DISCOVERY_REST_PORT}/api/use-cases/{use_case}/tables/{table}/layers/{layer_name}/clusters'
 
     response = requests.get(
             url,
@@ -81,52 +75,95 @@ def _fetch_nodes(use_case: str, table: str, layer_name: str) -> List[Dict]:
     )
 
     if response.status_code != 200:
-        raise ConnectionError(f"Could not fetch nodes for {use_case}//{table}//{layer_name} from semantic-linking microservice, statuscode: {response.status_code}!")
+        raise ConnectionError(f"Could not fetch clusters for {use_case}//{table}//{layer_name}, statuscode: {response.status_code}!")
+
+    return [ClusterDao(cluster_dict=row) for row in response.json()]
+
 
-    return response.json()
+def _fetch_timeslices(use_case: str, table: str, layer_name: str) -> List[Dict]:
+    jwt = TokenManager.getInstance().getToken()
+
+    url = f'https://{network_constants.ROLESTAGE_DISCOVERY_HOSTNAME}:{network_constants.ROLESTAGE_DISCOVERY_REST_PORT}/api/use-cases/{use_case}/tables/{table}/layers/{layer_name}/timeslices'
 
+    response = requests.get(
+            url,
+            verify = False, 
+            proxies = { "http":None, "https":None },
+            headers = {"Authorization": f"Bearer {jwt}"}
+    )
+
+    if response.status_code != 200:
+        raise ConnectionError(f"Could not fetch time slices for {use_case}//{table}//{layer_name}, statuscode: {response.status_code}!")
+
+    return [TimeSliceDao(time_slice_dict=row) for row in response.json()]
+
+
+def _fetch_layerpairs(use_case: str, table: str) -> List[Dict]:
+    jwt = TokenManager.getInstance().getToken()
 
-def fetch_nodes_from_semantic_linking(selected_use_cases: List[str] = None, selected_use_case_tables: List[str] = None):
+    url = f'https://{network_constants.BUSINESS_LOGIC_HOSTNAME}:{network_constants.BUSINESS_LOGIC_REST_PORT}/api/use-cases/{use_case}/tables/{table}/layer-pairs'
+
+    response = requests.get(
+            url,
+            verify = False, 
+            proxies = { "http":None, "https":None },
+            headers = {"Authorization": f"Bearer {jwt}"}
+    )
+
+    if response.status_code != 200:
+        raise ConnectionError(f"Could not fetch layer pairs for {use_case}//{table}, statuscode: {response.status_code}!")
+
+    return [LayerPairDao.create_from_dict(row) for row in response.json()]
+
+
+def fetch(selected_use_cases: List[str] = None, selected_use_case_tables: List[str] = None):
     '''Empties the db and inserts layers and nodes from BusinessLogic and SemanticLinking'''
-    repository = Repository()
+    repo = Repository()
     # please dont delete all layers/ nodes anymore @10.11.2020
     # repository.delete_all_layers()
     # repository.delete_all_nodes()
 
-    use_cases = _fetch_use_cases()
-    for use_case in use_cases:
+    for use_case in _fetch_use_cases():
         if selected_use_cases is not None and use_case not in selected_use_cases:
             continue
 
-        print(f"Fetching for use-case {use_case}")
-
-        tables = _fetch_tables(use_case)
-        for table in tables:
+        for table in _fetch_tables(use_case):
             if selected_use_case_tables is not None and table not in selected_use_case_tables:
                 continue
 
-            layers = _fetch_layers(use_case, table)
-            for layer in layers:
+            print(f"Fetching for {use_case}//{table}")
+            
+            try:
+                # copy all layer pairs
+                layer_pairs: List[LayerPairDao] = _fetch_layerpairs(use_case, table)
+                for lp in layer_pairs:
+                    repo.add_layer_pair(lp)
+            except ConnectionError as e:
+                print(str(e))
+
+            # copy all layers
+            for layer in _fetch_layers(use_case, table):
+
+                db_layer = repo.get_layer_by_name(use_case, layer.use_case_table, layer.layer_name)
+                if db_layer == None:
+                    repo.add_layer(layer)
+                else:
+                    print(f"Layer already exists, skipping cluster and timeslice fetching: {db_layer}")
+                    continue
 
                 try:
-                    print(f"Fetching nodes for layer {use_case}//{table}//{layer.layer_name}.")
-
-                    # check if layer already exists in DB, add it if not
-                    reference_layer = repository.get_layer_by_name(use_case, table, layer.layer_name)
-                    if reference_layer == None:
-                        repository.add_layer(layer)
-                    else:
-                        raise Exception(f"Layer should be unique, but was not: {reference_layer}")
-
-                    nodes = _fetch_nodes(use_case, table, layer.layer_name)
-                    for node in nodes:
-                        node['use_case_table'] = node['table']
-                        del node['table']
-
-                    for node in nodes:
-                        repository.add_layer_node(node)
-                        
+                    # copy all clusters
+                    clusters = _fetch_clusters(use_case, layer.use_case_table, layer.layer_name)
+                    for cl in clusters:
+                        repo.add_cluster(cl)
+                except ConnectionError as e:
+                    print(str(e))
+                    
+                try:
+                    # copy all timeslices
+                    timeslices = _fetch_timeslices(use_case, layer.use_case_table, layer.layer_name)
+                    for ts in timeslices:
+                        repo.add_time_slice(ts)
                 except ConnectionError as e:
                     print(str(e))
-                    continue
             
\ No newline at end of file

src/data-hub/proactive-community-detection-microservice/app/run_node_fetching.py

+import sys
+import os
+modules_path = '../../../modules/'
+if os.path.exists(modules_path):
+    sys.path.insert(1, modules_path)
+
+import json
+import urllib3
+urllib3.disable_warnings(urllib3.exceptions.InsecureRequestWarning)
+
+from processing.fetching import fetching
+
+if __name__ == "__main__":
+    fetching.fetch(selected_use_cases=['community-prediction-youtube-n'], selected_use_case_tables=None)
\ No newline at end of file

src/data-hub/role-stage-discovery-microservice/app/configs/routes.yml

@@ -162,7 +162,7 @@ paths:
             '404':
                 description: "Layer not found"
 
-  /use-cases/{use_case}/tables{table}/layers/{layer_name}/timeslices:
+  /use-cases/{use_case}/tables/{table}/layers/{layer_name}/timeslices:
     get:
         operationId: "routes.timeslices.get_by_name"
         security:

src/data-hub/role-stage-discovery-microservice/app/run_time_slicing.py

@@ -82,20 +82,20 @@ def get_layer_nodes(use_case, use_case_table, layer_name)-> List[dict]:
 
 def add_time_slice(timeslice):
     try:
-        # repo.add_time_slice(timeslice)  
+        repo.add_time_slice(timeslice)  
         pass
     except:
         print(f"Error while storing time slice in db for {timeslice.layer_name}")
 
-    try:
-        json_path = f'_predictions/timeslices/{timeslice.layer_name}/{timeslice.time}.json'.replace(', ', '_').replace('(', '').replace(')', '')
-        if not os.path.exists(os.path.dirname(json_path)):
-            os.makedirs(os.path.dirname(json_path))
-
-        with open(json_path, 'w') as file:
-            file.write(json.dumps(timeslice.to_serializable_dict(for_db=False)))
-    except Exception as e:
-        print(f"Error while writing json for {timeslice.layer_name}: {e}")
+    # try:
+    #     json_path = f'_predictions/timeslices/{timeslice.layer_name}/{timeslice.time}.json'.replace(', ', '_').replace('(', '').replace(')', '')
+    #     if not os.path.exists(os.path.dirname(json_path)):
+    #         os.makedirs(os.path.dirname(json_path))
+
+    #     with open(json_path, 'w') as file:
+    #         file.write(json.dumps(timeslice.to_serializable_dict(for_db=False)))
+    # except Exception as e:
+    #     print(f"Error while writing json for {timeslice.layer_name}: {e}")
 
 def run_time_slicing(selected_use_cases: List[str] = None, selected_use_case_tables: List[str] = None, selected_layer_names: List[str] = None):
     layers = get_layers()

src/modules/network_constants.py

@@ -55,6 +55,17 @@ else:
     ROLESTAGE_DISCOVERY_DB_HOSTNAME = 'articonf1.itec.aau.at'
     ROLESTAGE_DISCOVERY_DB_PORT = 30104
 
+## Proactive Community Detection
+if server:
+    PROACTIVE_COMMUNITY_DETECTION_HOSTNAME = 'proactive-community-detection'
+    PROACTIVE_COMMUNITY_DETECTION_REST_PORT = 80
+    PROACTIVE_COMMUNITY_DETECTION_DB_HOSTNAME = f'{ROLESTAGE_DISCOVERY_HOSTNAME}-db'
+    PROACTIVE_COMMUNITY_DETECTION_DB_PORT = 27017
+else:
+    PROACTIVE_COMMUNITY_DETECTION_HOSTNAME = 'articonf1.itec.aau.at'
+    PROACTIVE_COMMUNITY_DETECTION_REST_PORT = 30105
+    PROACTIVE_COMMUNITY_DETECTION_DB_HOSTNAME = 'articonf1.itec.aau.at'
+    PROACTIVE_COMMUNITY_DETECTION_DB_PORT = 30106
 #endregion Data Hub
 
 #region Rest Gateway

src/participation-hub/business-logic-microservice/app/configs/routes.yml

 paths:
-  #####
-  # USE-CASES
-  #####
+  
   /use-cases:
     post:
       security:
@@ -57,9 +55,8 @@ paths:
           description: "Successful Request"
         '403':
           description: "Confirmation required"
-  #####
-  # TABLES
-  #####
+  
+  # region tables
   /tables:
     get:
       security:
@@ -187,13 +184,9 @@ paths:
       responses:
         '200':
           description: "Successful Request"
-  #####
-  # END-TABLES
-  #####
+  # endregion tables
 
-  #####
-  # LAYERS
-  #####
+  # region layers
   /layers:
     get:
       security:
@@ -515,13 +508,9 @@ paths:
           description: "Field in request is missing"
         '403':
           description: "Confirmation required"
-  #####
-  # END LAYERS
-  #####
+  # endregion layers
 
-  #####
-  # ENUMS
-  #####
+  # region enums
   /enums:
     get:
       security:
@@ -618,6 +607,66 @@ paths:
           description: "Successful Request"
         '404':
           description: "Enum does not exist"
+  # endregion enums
+
+  # region context dependencies for community prediction
+  /use-cases/{use_case}/tables/{table}/layer-pairs:
+    get:
+      security:
+        - JwtRegular: []
+      operationId: "routes.context_pairs.get_all"
+      tags:
+        - "LayerPairs"
+      summary: "Retrieve all layer pairs for cluster prediction"
+      description: "Retrieve all layer pairs for cluster prediction"
+      parameters:
+        - name: "use_case"
+          in: "path"
+          description: "Name of the use-case"
+          required: true
+          type: "string"
+        - name: "table"
+          in: "path"
+          description: "Name of the table"
+          required: true
+          type: "string"
+      responses:
+        '200':
+          description: "Successful Request"
+          schema:
+            $ref: '#/definitions/LayerPair'
+        '404':
+          description: "pairs do not exist"
+    post:
+      security:
+        - JwtRegular: []
+      operationId: "routes.context_pairs.insert"
+      tags:
+        - "LayerPairs"
+      summary: "Add a new layer pair for cluster prediction"
+      description: "Add a new layer pair for cluster prediction"
+      parameters:
+        - name: "use_case"
+          in: "path"
+          description: "Name of the use-case"
+          required: true
+          type: "string"
+        - name: "table"
+          in: "path"
+          description: "Name of the table"
+          required: true
+          type: "string"
+        - name: "layer_pair"
+          in: "body"          
+          required: true
+          schema:
+            $ref: '#/definitions/LayerPair'
+      responses:
+        '200':
+          description: "Successful Request"
+        '400':
+          description: "incorrect format etc"
+  # endregion context dependencies
 
 definitions:
   LayerMapping:
@@ -684,4 +733,16 @@ definitions:
         type: array
         items:
           type: string
-          example: "internal_property_1"
\ No newline at end of file
+          example: "internal_property_1"
+
+  LayerPair:
+    type: "object"
+    properties:
+      use_case:
+        type: string
+      table:
+        type: string
+      layer:
+        type: string
+      reference_layer:
+        type: string
\ No newline at end of file

src/participation-hub/business-logic-microservice/app/db/entities/layer_pair.py

+from typing import List, Dict
+
+class LayerPair:
+    def __init__(self, use_case: str, table: str, layer: str, reference_layer: str):
+        self.use_case = use_case
+        self.table = table
+        self.layer = layer
+        self.reference_layer = reference_layer
+    
+    @staticmethod
+    def create_from_dict(dict_) -> 'LayerPair':
+        lp = LayerPair(None, None, None, None)
+        lp.__dict__.update(dict_)
+        return lp

src/participation-hub/business-logic-microservice/app/db/repository.py

@@ -3,13 +3,14 @@ import network_constants as netconst
 from database.MongoRepositoryBase import MongoRepositoryBase
 from db.entities.layer_adapter import LayerAdapter
 from db.entities.use_case import UseCase
+from db.entities.layer_pair import LayerPair
 
 import pymongo
 import json
 from typing import List, Dict
 
 class Repository(MongoRepositoryBase):
-    '''This is a repository for MongoDb.'''
+    '''This is a LAYER repository for MongoDb.'''
 
     def __init__(self):
         super().__init__(netconst.BUSINESS_LOGIC_DB_HOSTNAME,
@@ -18,6 +19,7 @@ class Repository(MongoRepositoryBase):
 
         self._adapter_collection = 'layer_adapters'
         self._use_case_collection = 'use_cases'
+        self._layer_pair_collection = 'contextpairs'
     
     def all(self) -> List[Dict]:
         result = super().get_entries(self._adapter_collection, projection={'_id': False})
@@ -59,4 +61,17 @@ class Repository(MongoRepositoryBase):
     
     def delete(self, adapter : LayerAdapter):
         collection = self._database[self._adapter_collection]
-        collection.delete_many({"name": adapter.name, "use_case": adapter.use_case, "table": adapter.table})
\ No newline at end of file
+        collection.delete_many({"name": adapter.name, "use_case": adapter.use_case, "table": adapter.table})
+
+
+    # region context pairs
+    def get_layer_pairs(self, use_case, table) -> List[LayerPair]:
+        return \
+            [LayerPair.create_from_dict(entry) for entry in
+            super().get_entries(self._layer_pair_collection, projection={'_id': False}, selection={"use_case": use_case, "table": table})
+            ]
+
+    def insert_layer_pair(self, uc, table, pair: LayerPair):
+        super().insert_entry(self._layer_pair_collection, pair.__dict__)
+
+    # endregion context pairs
\ No newline at end of file

src/participation-hub/business-logic-microservice/app/routes/context_pairs.py

+import json
+from flask import Response, request
+from db.repository import Repository
+from db.entities.layer_pair import LayerPair
+
+repo = Repository()
+
+
+def get_all(use_case: str, table: str):
+    return [e.__dict__ for e in repo.get_layer_pairs(use_case, table)]
+
+
+def insert(use_case: str, table: str, layer_pair: dict):
+    repo.insert_layer_pair(use_case, table, LayerPair.create_from_dict(layer_pair))
+    return Response(status=200)
\ No newline at end of file