Commit 9f4db2a6 authored by Bogdan's avatar Bogdan

Modified a few files for visualisation

parent e359a787
......@@ -17,6 +17,24 @@ repo = Repository()
def run_generic_clustering():
'''Runs the clustering for all layers found in the repository.'''
all_layers:List[Layer] = repo.get_layers()
#all_layers:List[Layer] = repo.get_layers_for_use_case("paper")
for layer in all_layers:
print(f"Clustering {layer.use_case}//{layer.use_case_table}//{layer.layer_name}.")
if layer.properties is None or len(layer.properties) == 0:
print("skipping")
continue
try:
clusters = run_clustering_for_layer(layer)
store_generic_clusters(clusters)
except Exception as e:
print(str(e))
def run_clustering_for_Paper_case():
all_layers:List[Layer] = repo.get_layers_for_use_case("paper")
for layer in all_layers:
print(f"Clustering {layer.use_case}//{layer.use_case_table}//{layer.layer_name}.")
......
......@@ -6,6 +6,7 @@ repo = Repository()
def run_similarity_calc_per_use_case():
layers = repo.get_layers()
#layers = repo.get_layers_for_use_case("paper")
uc_layers = {}
for layer in layers:
......@@ -19,6 +20,20 @@ def run_similarity_calc_per_use_case():
print(f"Running for use case {key} with layers {str(layers)}.")
SimilarityCalc.main(layerNameList=layers)
def run_similarity_calc_for_Paper_case():
layers = repo.get_layers_for_use_case("paper")
uc_layers = {}
for layer in layers:
uc = layer.use_case
if uc not in uc_layers:
uc_layers[uc] = []
uc_layers[uc].append(layer.layer_name)
for key in uc_layers:
layers = uc_layers[key]
print(f"Running for use case {key} with layers {str(layers)}.")
SimilarityCalc.main(layerNameList=layers)
if __name__ == '__main__':
run_similarity_calc_per_use_case()
\ No newline at end of file
# add modules folder to interpreter path
# import sys
# import os
# modules_path = '../../../modules/'
# if os.path.exists(modules_path):
# sys.path.insert(1, modules_path)
# #######LOGGING############
# import logging
# LOG_FORMAT = ('%(levelname) -5s %(asctime)s %(name)s:%(funcName) -35s %(lineno) -5d: %(message)s')
# logging.basicConfig(level=logging.INFO, format=LOG_FORMAT)
# LOGGER = logging.getLogger(__name__)
######SECURITY#############
# import connecion
# from security import swagger_util
# from pathlib import Path
# from env_info import is_running_locally, get_resources_path
######PROCESSING##########
#from run_clustering import run_clustering_for_Paper_case
import run_clustering as clustering
import run_similarity_calc as similCalc
import processing.similarityFiles.dataInput as inputData
##################################
#TODO: get certificates/authorization
# SSL configuration
# certificate_path = get_resources_path()
# context = (os.path.normpath(f'{certificate_path}/articonf1.crt'), os.path.normpath(f'{certificate_path}/articonf1.key')) # certificate and key files
# if is_running_locally():
# print("Running locally...")
# app.add_api(swagger_util.get_bundled_specs(Path("configs/swagger_local.yml")),
# resolver = connexion.RestyResolver("cms_rest_api"))
# else:
# app.add_api(swagger_util.get_bundled_specs(Path("configs/swagger.yml")),
# resolver = connexion.RestyResolver("cms_rest_api"))
##################################
def mainViz():
#procesing data
clustering.run_clustering_for_Paper_case()
similCalc.run_similarity_calc_for_Paper_case()
inputData.getClusterDataFromMongo("Paper",None,None)
#inputData.getSimilarityDataFromMongo(cluster_layer: str= None, batchSize: int=1000, run_id: str=None)
#similarityArrFromMongo = getSimilarityDataFromMongo("Paper")
......@@ -38,6 +38,23 @@ paths:
description: "Successful operation"
schema:
$ref: "#/definitions/NodeCollection"
delete:
security:
- JwtAdmin: []
operationId: "routes.nodes.delete_nodes_for_use_case"
tags:
- "Nodes"
summary: "Delete all nodes in the Use-Case"
description: "Delete all Nodes in the specified Use-case"
parameters:
- name: "use_case"
in: "path"
description: "Name of the requested Use-Case"
required: true
type: "string"
responses:
'200':
description: "Successful Request"
/use-cases/{use_case}/tables/{table_name}/nodes:
get:
security:
......@@ -62,6 +79,30 @@ paths:
description: "Successful operation"
schema:
$ref: "#/definitions/NodeCollection"
delete:
security:
- JwtAdmin: []
operationId: "routes.nodes.delete_nodes_for_table"
tags:
- "Nodes"
summary: "Delete all nodes in the table of the Use-Case"
description: "Delete all Nodes in the table of the specified Use-case"
parameters:
- name: "use_case"
in: "path"
description: "Name of the requested Use-Case"
required: true
type: "string"
- name: "table_name"
in: "path"
description: "Name of Table the node belongs to"
required: true
type: "string"
responses:
'200':
description: "Successful Request"
/use-cases/{use_case}/tables/{table_name}/layers/{layer_name}/nodes:
get:
security:
......@@ -132,6 +173,28 @@ paths:
description: "Successful operation"
schema:
$ref: "#/definitions/LayerCollection"
delete:
security:
- JwtAdmin: []
operationId: "routes.layers.delete_layers_for_table"
tags:
- "Layers"
summary: "Delete all layers in the table of the Use-Case"
description: "Delete all layers in the table of the specified Use-case"
parameters:
- name: "use_case"
in: "path"
description: "Name of the requested Use-Case"
required: true
type: "string"
- name: "table_name"
in: "path"
description: "Name of Table"
required: true
type: "string"
responses:
'200':
description: "Successful Request"
/use-cases/{use_case}/tables/{table_name}/layers/{name}:
......@@ -187,6 +250,23 @@ paths:
$ref: "#/definitions/LayerCollection"
'404':
description: "No layers found"
delete:
security:
- JwtAdmin: []
operationId: "routes.layers.delete_layers_for_use_case"
tags:
- "Layers"
summary: "Delete all layers in the Use-Case"
description: "Delete all layers in the specified Use-case"
parameters:
- name: "use_case"
in: "path"
description: "Name of the requested Use-Case"
required: true
type: "string"
responses:
'200':
description: "Successful Request"
# endregion layers
definitions:
......
......@@ -66,6 +66,11 @@ class Repository(MongoRepositoryBase):
collection = self._database[self._layer_collection]
collection.delete_many({"use_case": use_case})
def delete_layers_for_table(self, use_case: str, table:str):
''' Delete layers from the table of the given Use_case '''
collection = self._database[self._layer_collection]
collection.delete_many({"use_case": use_case, "table":table})
def add_layer_node(self, node: dict):
super().insert_entry(self._layer_nodes_collection, node)
......@@ -95,4 +100,15 @@ class Repository(MongoRepositoryBase):
projection={'_id': 0})
return list(entries)
def delete_nodes_for_use_case(self, use_case):
'''Deletes All node of the given use_case'''
collection = self._database[self._layer_nodes_collection]
collection.delete_many({"use_case": use_case})
def delete_nodes_for_table(self, use_case, table_name):
'''Deletes nodes from the given table of the use-case'''
collection = self._database[self._layer_nodes_collection]
collection.delete_many({"use_case": use_case, "table": table_name})
# endregion
......@@ -33,4 +33,14 @@ def get_by_use_case(use_case: str):
else:
return Response(status=404)
def delete_layers_for_use_case(use_case: str):
repo.delete_layers_for_use_case(use_case)
print("Deleted all layers from" + use_case)
return Response(status=200)
def delete_layers_for_table(use_case: str, table_name: str):
repo.delete_layers_for_table(use_case, table_name)
print("Deleted all layers from: " + use_case + " , "+ table_name)
return Response(status=200)
#endregion
......@@ -20,4 +20,14 @@ def nodes_for_use_case_and_table(use_case: str, table_name: str) -> List[Dict]:
def nodes_for_use_case_and_table_and_layer(layer_name: str, use_case: str, table_name: str) -> List[Dict]:
res = repo.get_nodes_for_use_case_and_table_and_layer(layer_name, use_case, table_name)
return res
\ No newline at end of file
return res
def delete_nodes_for_use_case(use_case: str):
repo.delete_nodes_from_use_case(use_case)
print("Deleted all nodes from" + use_case)
return Response(status=200)
def delete_nodes_for_table(use_case: str, table_name: str):
repo.delete_nodes_for_table(use_case, table_name)
print("Deleted all nodes from: " + use_case + " , "+ table_name)
return Response(status=200)
\ No newline at end of file
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